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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … this collection in total contains approximately 100,000 bacterial strains, and a hundred thousand fungal strains. …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … that showcase our collaborations and capabilities to enable great science that will help solve energy and …
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … Fagnan, Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … about several different pieces of her work, including bacterial quorum sensing and its effects on regulation of … is you will mix together your receptor of interest with genomic DNA, and then allow that to bind. Your receptor also …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded by …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI resources, as well as … works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT … genome engineering (CRAGE), which offers single-step genomic integration and prototyping of complex pathways. The …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … and Environment (iSEE) and the Carl R. Woese Institute for Genomic Biology (IGB), and it will include 17 partner …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … been dominated for … well, as long as I can remember, by bacterial research.  So it was great to hear her passion and … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural …
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