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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential … The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … genome function, particularly those not readily achievable without the capabilities and expertise available at the JGI. …
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Natural Prodcast Episode 1: The Primer, Part 1
… that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … metabolism – field, though, is real, and it’s a field with very real and truly amazing science with a long … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …
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Natural Prodcast Episode 7: Ben Shen
… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … than 7 decades. So, this family of substances is always associated with toxicity, basically, killing cells. ALISON: … genome. So in 2000 genome sequence became available. That changes everything!  So, that leads me today to, …
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Frequently Asked Questions: Proposal Submission
… at any career stage. Generally, most users are able to work with Berkeley Lab.  However, users from certain countries … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … are encouraged to contact the JGI concerning other genomic resource needs. … Scientific merit is the major …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be a … that’s used for secondary metabolism, they are copies and changes that nature has made. So secondary metabolism is …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – …
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Synthesis
… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA …   Representative software includes: … Plus: SynTrack and associated tools, which track samples through the JGI’s …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … public, and everyone can see your name attached to those changes, those posts, whatever you’ve attached to the … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Programs & Platform Leads
… the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and … Science Programs and draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI …
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Natural Prodcast Episode 5: Brad Moore
… lucky to get some time to sit down and have a great chat with him.  I kind of lost count of how many times Brad used … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of … Not a big leap, but then we began looking at microbiomes associated with various invertebrate organisms, whether it …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group … gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate … Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s …
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