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Secondary Metabolites Program
… which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often … and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary metabolites …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data … resource where data from different organizations is discoverable and accessible. Linking the resources of powerful … these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … sequences previously unrecognized within existing public databases and recovered more than 3,000 others from …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … He also contributed to an update of  the JGI’s Genome OnLine Database (GOLD ) database that also marked the …
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Examples: Successful LOIs & Submissions
… Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … Collaborations for User Science calls. These documents have been shared with permission from the PIs who drafted … Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research … empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …
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Rice SNP-seek database update: new SNPs, indels, and queries
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Data Policy
… and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain types of data to support their use … Integrating Collaborations for User Science (FICUS) initiative, Director’s Science (DS), Biological and Environmental …
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JGI-TMF Critical Minerals and Materials Call
… genomics with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that address … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, … Foundry User Portal . All proposals undergo technical review by JGI staff as well as staff at the other …
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Sequencing Technologies & Products
… capacity through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    Overview of sequencing products The JGI operates highly scaled … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …
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