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FICUS Overview
… provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
Learn more
Natural Prodcast Episode 6: Marc Chevrette
You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … Wisconsin, and we try and use them to fuel a drug discovery pipeline. So that’s two prongs and one of those prongs is … this and deal with it is through these antibiotic- or antifungal-producing bacteria that live on the exoskeleton of …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities … into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation support   …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … of multiple forest systems, this work sets up protocols and pipelines that other teams can use around the world. These …
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable … access and analyze data on scales ranging from single genes and individual genomes to metagenomes to systems-level …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both …
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Natural Prodcast Episode 17: Cassandra Quave
… could be used to treat these highly resistant bacterial and fungal pathogens. And we’ve actually just wrapped up a year, … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … your website that-- speaking of hormones, that you're also using hormones as this chemical communication signal. BETSY … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: …
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Viral Genomics Group
… al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Frequently Asked Questions: Proposal Submission
… limits, and instructions.  Many of the submissions are done using web-based forms.   To view the proposal templates, go … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact …
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