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Natural Prodcast Episode 22: Alison Narayan
… enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … or something, but they confirmed that it had just been completely consumed. DAN UDWARY: Grad students need calories …
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Complete Genome Sequence of Rahnella sp. Strain Y9602, a Gammaproteobacterium Isolate from Metal- and Radionuclide-Contaminated Soil
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Partnerships: Myco-Ed
Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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Natural Prodcast Episode 20: Brian Bachmann
… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … called Ecopia was talking about a gene cluster a week. They completed a gene cluster per week. And that really got me …
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Scientific Advisory Committee
JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … on the effective management and strategic objectives of the JGI. The SAC serves as the Institute's key external … and Environmental Research (BER) program, set the final sequence allocation for this program. …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …
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Plant Program
… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain … with known receptors, but we also have ones that are completely their own cluster. And so we're hypothesizing …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … trying to understand that system is just not possible from– completely understanding the system is not possible from the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s …
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