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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … when the snowpack melted went into the lake. And so the levels were decreasing at an alarming rate, but it has risen … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) …
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Protein-based organelles in bacteria: carboxysomes and related microcompartments
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Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … how fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the … kingdom, they are well-suited to train machine learning models that predict biological traits from DNA sequences. …
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Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly*
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics There … (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … system that was previously only understood at a genetic level. Functional and structural experiments showed how the … and nitrogenase in both folding and metallocofactors. This atomic resolution structure showed a P-cluster …
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