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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at …
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … pairs. It was not linear, like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …
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Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in … sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … your Project Manager or jgi-project_mana[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon …
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De novo DNA synthesis using polymerase-nucleotide conjugates
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, … group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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