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Metabolomics Technology Group
Our lab is using mass spectrometry based metabolite profiling to provide … datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI … — and harness — the superpowers encoded in plants, fungi, microalgae, environmental viruses, and bacteria to …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … data will also soon be contained within the JGI’s Secondary Metabolism Collaboratory (SMC) portal ( smc.jgi.lbl.gov ). … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … functional genome annotation, improves understanding of the role small molecules play in diverse biological … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … author Candice Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of … fungi synthesize molecules that are sources of new chemical diversity; the team identified what looked to be three …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … user. PLEASE NOTE: The JGI will not accept any materials classified above NIH Biosafety Level 2. 3) Review Shipping …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … much is unknown about the taxonomic diversity and methane metabolism within the Florida Everglades. They decided to … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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