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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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Litter chemistry influences decomposition through activity of specific microbial functional guilds
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High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
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Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
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Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British … is where I first met Roger, when we were both postdocs at Scripps Institution of Oceanography. Roger was splitting his …
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JGI@25: From Life at the Extremes to Editing Genomes
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … CRISPR-Cas9 work, the Doudna lab at UC Berkeley seeks other enzymes in the CRISPR-Cas system. For the past few years … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint … signals. But really unpacking that complicated network of chemistry and communication is what I’m really interested … of a certain class of antibiotic compounds called glycopeptides. And, you know, even though there were only, you …
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Natural Prodcast Episode 18: A CSP Primer
If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, … like through NIH or NSF that people would maybe normally be applying for. And then, my audience would have specific … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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