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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … molecule, lignin. Understanding Lentinula genomes and their evolution could provide strategies for converting plant … that Lentinula fungi rely on to decay wood were widely conserved across species. Specifically, many species had …
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Accelerating Metagenomics Discoveries with Deep Learning
Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … proteins to become much simpler; instead of aligning sequences with popular, but computationally costly …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … Grant-In-Aid of Research, and Society for the Study of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Natural Prodcast Episode 15: Katherine Duncan
Kate Duncan: Yeah, so I guess we’re really interested in accelerated discovery by integrating biology and chemistry … are all really closely related things in terms of, like, evolution, in terms of taxonomy– produced really different … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the proteins that … and another system. There should be. I mean, there’s some evolution that happened. But, you know, bacteria don’t leave …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … allows us to uncover globally distributed molecules with conserved structures, offering fresh insights into DOM's …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … problem in the field, that there were many papers reporting sequences and pathways– sequence is not right to say. But of … in more detail. Especially if you want to look at the evolution of these gene clusters, for example, you really …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … arc. And so, you know, definitely there has been a strong evolution in terms of the way the group thinks and that the … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … environment you mentioned, you know that they can have consequences to marine life that surrounds it, whether it be …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … species”… he’s now found that some fungi have different ITS sequences in their genome, which might get you a little … understand that a little bit better, with some advances in evolution and cell biology. I’m interested in that. And we …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …
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