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Natural Prodcast Episode 9: Roger Linington
… which I haven’t seen in natural products a whole lot in the past. This sort of idea of, “there’s a lot of data out … from drug discovery in every possible disease target area, using an enormous array of different isolation … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Natural Prodcast Episode 4: Nancy Keller
… ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … products and fungal biosynthesis. What’s kept you in that area?   NANCY: Oh, well, I love fungi, okay, this doesn’t … use natural products necessarily. Fungi are large. They’re microbes, but they’re large microbes. And they have all …
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DNA Synthesis Program
… decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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Micro-Scale Applications Group
… sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling strategies that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic … Research Areas …
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Project Management Office
… Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …
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FICUS-NERSC/KBASE
… these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a … basis, in accordance with JGI’s data release policy.  Interactions with applicants and others who might be …
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Data Ecosystem
… and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and … of data or capabilities in their respective subject area. …
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User Programs
… that integrate genomics with nanoscale science in the area of critical minerals and materials. Details Proposals …
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Examples: Successful LOIs & Submissions
… Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … to soil carbon storage during simulated range shifts of plant-fungal symbionts … the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …
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FICUS
… on high-risk/high-payoff proposals within the focused topic areas that can be completed on an accelerated timeline as … full applications for projects outside of DOE mission areas or outside the scope of the call.  Letters are … for disapproval being lack of relevance to DOE mission areas.  Initiate a new LOI by logging into the   EMSL User …
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Products
… contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun … these projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome Plant and Algal Resequencing SNP and short indel calls, …
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Special Initiatives & Programs
… BER Funding Opportunity Announcements ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early … The four Centers are located in geographically distinct areas and use different plants both for laboratory research and for improving …
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