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Doubling Down on Known Protein Families
… protein families in order to predict new functions,” said  Nikos Kyrpides , senior author of the study and head of the JGI’s  … challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the …
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How to Submit Sequencing Samples
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… on mining prokaryotic viruses together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also … challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
Berkeley Lab were Lauren Belisario, Greg Hura, Jan Kern, Nikos Kyrpides, Trent Northen, Robert Kostecki, Susan Tsutakawa, … challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the …
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Natural Prodcast Episode 21: Elizabeth Parkinson
And once we figure that out, we have designed GFP based plasmids where we can actually then put these in E. coli and … to get all the screening done with the molecules and the plasmids. DAN: Sure... My audience might not know what DAP-seq … But what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this …
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An Automated Tool for Assessing Virus Data Quality
… first author in the Microbiome Data Science group led by Nikos Kyrpides. To demonstrate its utility, Nayfach applied CheckV … Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. … CheckV on IMG/M Data portal … …
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Natural Prodcast Episode 6: Marc Chevrette
Academic research only exists through the energy and enthusiasm of young researchers, so it’s important to me to tell …
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Kjiersten Fagnan
Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan was part of the Gordon Bell prize winning … Performance Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. …
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Meeting Code of Conduct
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