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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … year, the third and final annual cleanup day filled nearly 24 speedpaks, and more than half of them were tagged for …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a … Society for Industrial Microbiology and Biotechnology 13 granted patents, 33 pending. Includes: Enhancing spinosyn … binding proteins. (2014) U.S. Patent Application US8741603 Fermentative vitamin C production. (2012) U.S. Patent …
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Microbiome Data Science Team
… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … for the next five years. It also includes more than 130 implementation milestones to help track and drive …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… system to study virus-host interactions. Approximately 150 archaeal viruses had been previously identified. The JGI … , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed … of the German Science Foundation (grant number DFG PR1603/2-1). The authors acknowledge sampling logistics provided …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … information,” Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the … 20 UC Merced students have contributed to the research of 13 JGI scientists through the JGI-UC Merced Genomics …
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An Automated Tool for Assessing Virus Data Quality
… Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 … Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. …
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JGI at the AGU Fall Meeting
… (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno … resolving nitrogen transformations in the critical zone” 8:03am Convention Center eLightning Theater III: Pamela …
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2024 Progress Report
… in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, 247 publications …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most …
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The JGI Data Portal: Improving User Experience
… needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. …
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