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Fungus Fuels Tree Growth
… and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … Interactions . The results were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . By contrast, using a different endophytic fungus,  …
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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also … at over 270 places now worldwide with a rate of around 10,000 students a year. And that was those numbers were … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …
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Fungal Friends or Foes in Plant Roots
… toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled … populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the collection. The team then … Grigoriev , the paper is an “excellent example” of how a 1000 Fungal Genomes project can enable studies of plant root …
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From Competition to Cooperation
… across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry … root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, … U.S. Department of Energy under Contract No. DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics …
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Events
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Microbiome Data Science Team
… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the next five years. It also includes more than 130 implementation milestones to help track and drive … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved to Berkeley , two of the …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … mat, the virus-to-host ratio for most pairs was close to 1. Even the most abundant virus was only 11 times more abundant than its host. There just don’t seem …
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2024 Progress Report
… 2,475 — had active proposals with us, along with more than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, 247 publications …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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Natural Prodcast Episode 12: Nadine Ziemert
… of secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with … Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … NADINE ZIEMERT: It wasn’t that long ago, but maybe 2006, 2007, or something like that. And we actually found the whole …
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