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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on …
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Examples: Successful LOIs & Submissions
… CSP Large Scale Proposal #1 … CSP Large-Scale LOI #1 … FICUS Example #1 …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become … genomes based on which version of Phytozome (e.g., 9, 10, 11, 12) they were first released in.  Are any genomes from …
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Data Ecosystem
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Cataloging the Microbes that Manage the Health of River Systems
… the microbiology of watershed systems, they utilized over 160 river water samples collected through WHONDRS, a … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National Science Foundation …
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JGI Portals
… metagenomes, and metatranscriptomes. It features over 15 million viral genomes and fragments, enriched with … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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Webinar: SIP technologies at EMSL and JGI
… NanoSIMS, and other techniques. Q&A from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP … future. 5. Q: How well-suited is the LA-IRMS for tracking N15? The example in the presentation was with C13.  A:  Yes, … true. The more the label we have, the better we can see it. 11. Q: Since Jim Moran was able to identify the major …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the oil … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. …
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Tracing the Evolution of Shiitake Mushrooms
… atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the … by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to … US Department of Energy operated under contract no. DE-AC02-05CH11231. …
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What Happens Underground Influences Global Nutrient Cycles
… and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint …
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Fungus Fuels Tree Growth
… and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … Interactions . The results were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . By contrast, using a different endophytic fungus,  …
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Microbiome Data Science Team
… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host …
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