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Frequently Asked Questions: Project Management
… by your project manager in the initial correspondence with you if the User Agreement and Appendix are active and … manager may then schedule and allocate resources for DNA sequencing. … Guidance on international shipments can be found in the Sequencing Sample Overview file in our HERE (TK) .  Note: …
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New Lineages of Life Group
… environmental samples. This work combines third generation sequencing and machine learning to enable fast, accurate … lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean .”  Current Biology , … taxonomy and quality assessment of giant virus genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” … the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per library. …
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RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes
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Frequently Asked Questions: Proposal Submission
… at any career stage. Generally, most users are able to work with Berkeley Lab.  However, users from certain countries … authorization from other U.S. government agencies to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval.    JGI staff are not eligible …
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JGI@25: Strengthening Soybean
… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … more about the soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the … was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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Leo Baumgart
… at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at the … and Timothy J. Donohue. "Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of …
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Natural Prodcast Episode 16: Marcy Balunas
… kinds of biology, one of the best things that we do is work with this really great group of biologists that know what … really exciting work on figuring out how to get genomic sequencing data for the fungus garden because it’s more … in this project, the interaction with JGI was really around sequencing for, I think, for the fungus garden and some of …
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Natural Prodcast Episode 14: Nigel Mouncey
… to a regular schedule. I’m going to kick things off today with my interview with the Director of the Joint Genome … NIGEL MOUNCEY: Oh, sure. I think our legacy obviously is in sequencing.  DAN: Of course.  NIGEL MOUNCEY: Sequencing the wazoo out of anything that’s relevant to the …
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Secondary Metabolites Program
… to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential … plants. These compounds are key to organisms' interactions with their environments and with each other, from defending against predators to aiding …
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Natural Prodcast Episode 7: Ben Shen
… out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help … because – mainly it’s due to the emerging technology on DNA sequencing and synthetic biology. But also the metagenomics …
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Environmental Genomics Group
… lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … isotopes from labeled nutrients into biomass. When paired with metagenomics, qSIP can decipher active microbial … DNA by active microbial populations (Hungate et al. 2015). With the development of high-throughput SIP (Nuccio et al. …
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