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RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes
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Frequently Asked Questions: Project Management
… by your project manager in the initial correspondence with you if the User Agreement and Appendix are active and … manager may then schedule and allocate resources for DNA sequencing. … No. However, the JGI does maintain a list of … … Guidance on international shipments can be found in the Sequencing Sample Overview file in our HERE (TK) .  Note: …
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Secondary Metabolites Program
… to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential … We have developed Regulon Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma … We are also utilizing DNA-Affinity Purification (DAP) sequencing to express hundreds of transcription factors and …
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Natural Prodcast Episode 14: Nigel Mouncey
… to a regular schedule. I’m going to kick things off today with my interview with the Director of the Joint Genome … NIGEL MOUNCEY: Oh, sure. I think our legacy obviously is in sequencing.  DAN: Of course.  NIGEL MOUNCEY: Sequencing the wazoo out of anything that’s relevant to the …
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Natural Prodcast Episode 16: Marcy Balunas
… kinds of biology, one of the best things that we do is work with this really great group of biologists that know what … really exciting work on figuring out how to get genomic sequencing data for the fungus garden because it’s more … in this project, the interaction with JGI was really around sequencing for, I think, for the fungus garden and some of …
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Frequently Asked Questions: Proposal Submission
… at any career stage. Generally, most users are able to work with Berkeley Lab.  However, users from certain countries … contact us in advance for advice. … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … Energy’s funding of the JGI. … No, the proposal is only for sequencing, metabolomics and/or synthesis effort at the JGI. …
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JGI@25: Strengthening Soybean
… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … more about the soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the … was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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Natural Prodcast Episode 7: Ben Shen
… out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … started collaborating with Ben and his group to work on sequencing, synthesis and genome mining technology to help … because – mainly it’s due to the emerging technology on DNA sequencing and synthetic biology. But also the metagenomics …
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Marisa Davis
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Project Management Office
… of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard … approved proposal – including the submission of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all …
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Natural Prodcast Episode 19: Bill Fenical
… and we talk about an ongoing project I’ve been working with him on as an exploration into the secondary metabolism … territory for us, and I’m grateful to be working with him, and so happy we got the chance to record this … that this episode will be monumental as the last episode with Alison as my co-host. We recorded this an awfully long …
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