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Sequencing Submission Requirements for DNA Synthesis
Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … of Work document. … Shining a Light: Advanced Photon Source Capabilities for FICUS Research describes the resources available from all the facilities participating in …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … in particular to study inter-organismal interactions. Novel approaches are being explored to predict microbial … samples.  … The IMG/M system serves as a community resource for comparative analysis and annotation of all …
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Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components   The … yield fuels, and removing lignin in order to do so is a resource-intensive process. Now, a new study shows how … accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than presumed. After …
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … this year. And today we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this description, but I’d …
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Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
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JGI Portals
Our data platforms are a key resource for the broader scientific community and require … constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced …
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Synthesis
… develops data science tools for workflow management and novel automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … … gRNA-SeqRET … BOOST … Synthesis Platform Lead … More Resources … Software Engineers in the Synthetic Biology …
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