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Metabolomics
… an environment that influence system behavior.  Through this identification, metabolomics enables functional genome … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … methods optimized for specific types of molecules.   … Find more details on the instrumentation we use and our …
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CalTeach
CalTeach is a program for undergraduate majors interested in … with concurrent field work in local classrooms and tutoring centers. Cal Teach offers a minor in Science and Math Education, as well as a unique opportunity to complete a California K-12 science or math teaching …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once … RNA viruses in large data sets, their work may be akin to finding a single snowflake on a colored-in page of that … impact the planet’s nutrient cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering …
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Finding the Fermenters
… database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional … PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded … . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … robust high-yielding feedstock plants, using advanced genetic technology to accelerate the domestication of …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: hot … were lost in other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  …
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Evolutionary instability of CUG-Leu in the genetic code of budding yeasts
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Learning to Look
… learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to … be spotted with a striped scarf, striped hat, round-rimmed glasses, or a cane, but only Waldo will have all of these … affiliated with the Inoviridae. “What we’re really doing is looking for a particular gene found in all inoviruses, and …
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Institutional User Agreements
Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of … Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must … JGI is ready to send the constructs. The MTA requires signatures by an institution’s authorized representative, the …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can …
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Uri Neri
… days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and … "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …
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