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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … viruses (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial …
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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … portal. The Fungal & Algal Program aims to streamline genome analysis workflows for microbial eukaryotes, build …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: … by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s … hear more science from her, check out her podcast, Genome Insider. She talks to lots of great scientists outside of …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … to the second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow … hear more science from her, check out her podcast, Genome Insider. She talks to lots of great scientists outside of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and …
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