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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology … for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research projects to … projects to demonstrate new genomic capabilities. Research Team    …
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Natural Prodcast Episode 5: Brad Moore
Alison and I were lucky to get some time to sit down and have a great chat with him.  I kind of lost count … which is kind of the hallmark or the philosophy of his group and I think in hearing him talk about natural products … might make this molecule and predicting what kind of enzymes might be involved, and then being able to make those …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … interactions to untangle. Fungi work in cooperation to support a forest, and species vary across Earth’s … this work sets up protocols and pipelines that other teams can use around the world. These tools give researchers …
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Synthetic Biology Lab
Biology lab is divided into a DNA synthesis production group and a synthetic biology applications group. The DNA synthesis and assembly group: Our production … for inferring genotype to phenotype associations. Research Team    … For further details, please reach out to the Group …
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Natural Prodcast Episode 2: The Primer, Part 2
This is part 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things … not their normal natural environment. They usually grow down within the soil. And that purple blob is going to be …
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Busting the Unbreakable Lignin
… little exception, organisms have figured out how to create enzymes that break these components down into glucose. It’s … as the fungus did its work.  The UC Santa Barbara team worked with researchers at the U.S. Department of … conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …
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Synthesis
Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to convert sequence into … nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic Biology Lab : a user … user accessible Synthetic Biology Informatics Group : a team that develops data science tools for workflow …
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JGI@25: Using Team Science to Build Communities Around Data
… countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community … of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi … focused on in-depth exploration of ecology-related groups of fungi. The 1KFG project has brought together over 400 …
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Viral Genomics Group
… exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of … impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and …
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Picking Up Threads of Cotton Genomics
… two varieties: 95 percent of what is grown is known as Upland cotton ( Gossypium hirsutum ), while the remaining 5 … of cotton A and cotton D genomes. A multi-institutional team including researchers at the U.S. Department of Energy … crops. Additionally, cotton is almost entirely made up of cellulose and it is a fiber model to understand the …
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Plant Program
… bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants are a major … genes to improve our domesticated species.  The program supports the development of next-generation biofuels by … enhances our understanding of natural compounds that support disease resistance, with applications in sustainable …
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Natural Prodcast Episode 4: Nancy Keller
… episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … And the other one is called Bacteriology. But it’s supposed to include all microbes in it. But yeah, it’s called … I wish we could predict. I wish we could look at these enzymes and predict, and really place it to structure. …
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