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Natural Prodcast Episode 20: Brian Bachmann
… two things I wanted to tell you about in this introduction. First and foremost, our interview this week is with … schedule, I’m committing to it, and you all can hold me accountable and yell at me if I slip again. My JGI coworkers … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really …
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Synthetic Biology Lab
… group operates as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I … natural product biosynthetic pathways, which led her to a successfully funded JGI CSP project. And we also got to talk … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain …
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Natural Prodcast Episode 16: Marcy Balunas
… based in Panama and was dual there and at Scripps where I first met Dan. I think you were almost finishing when I was … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to … with Jonathan Klassen here at the University of Connecticut. And he has been looking at these fungus gardening ants …
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Natural Prodcast Episode 14: Nigel Mouncey
… Nigel Mouncey. DAN: I’ll start by saying this is the first in-person recording that I’ve done since that first … One is Spinosad. Its a natural fermentation product of Saccharopolispora spinoza . And the other is spinetoram which … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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Jeremy Schmutz
… 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … He provides scientific project management for the reference eukaryotic genomes produced by the DOE Joint … Plants 3:17054. Schmutz, J, & McClean P et al. 2014. A reference genome for common bean and genome-wide analysis of …
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Revisiting the sequencing of the first tree genome: Populus trichocarpa
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JGI@25: Studying Sorghum’s Survival Skills
… but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 …
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JGI announces first round of 2023 New Investigator awardees
… DOE missions and from PIs who have not led any previously-accepted proposals —  through the  New Investigator call under our Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are …
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Synthetic Biology Informatics Group
… tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination … Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well …
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Better Genome Editing for Bioenergy
… Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were … “Give me six hours to chop down a tree and I will spend the first four sharpening the axe.” In this study,  published …
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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58
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