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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science … by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. Their work showed that … is akin to the structure of social media networks where one social media group may have a relatively constrained set …
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Mapping the Earth’s Hidden Fungal Kingdom
… into an estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in … fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those sequenced, … forefront of tackling this enormous challenge, assembling one of the world's most comprehensive collections of fungal …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  … Dothideomycetes genomes were conducted as part of the 1000 Fungal Genomes Project supported by the JGI Community …
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Project Management Office
… Manager Miranda Harmon-Smith DNA Synthesis and Single-Cell Genomics Vivian Ng Fungal Genomics …
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Assembling the Marine Metagenome, One Cell at a Time
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Environmental Genomics Group
… Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … This methodology builds on the framework of Hungate and colleagues, to quantify heavy isotope incorporation into DNA by active microbial populations (Hungate et al. 2015). With the development of high-throughput SIP (Nuccio et …
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Fungal Friends or Foes in Plant Roots
… other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … They play key roles in maintaining the plant’s health and diversity, which can in turn boost yields for both food and … colonize roots by degrading the plant cell wall component pectin. The results therefore predicted that these …
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User Programs
… Feb 19, 2026 (Proposals due 4/30/26) April 9, 2026  11:59pm PT  Sep 8, 2026 Jan 29, 2027 March 31, 2026 Review Date …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … call included algal genomics as a focus area, and one of the accepted proposals came from Chris Bowler of … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was … aims to encourage innovative research exploiting a diversity of capabilities. Previously, researchers had to … that truly integrated the capabilities of more than one facility. The FICUS initiative not only simplifies and …
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Frequently Asked Questions: Proposal Submission
… limits, and instructions.  Many of the submissions are done using web-based forms.   To view the proposal templates, … submission page , login using your JGI account (create one here if you don’t already have an account) and click the … eligible to submit proposals, or to be listed as co-PIs or collaborators.   JGI’s standard User Agreement must be …
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Special Initiatives & Programs
… Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both eligible for BERSS). … sequencing, synthesis, or metabolomics should apply to one of the JGI’s  calls for user proposals . …
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