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UC Merced Interns Reflect on Their JGI Summer Projects
… remotely due to COVID-19 restrictions, but virtual events and technology enabled a fruitful experience for … and GitHub enabled virtual collaboration. JGI also hosted events to enable students to showcase their work and even a …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform … and metabolic roles across global metagenomes (within IMG).  The Impact The initial analysis highlights abundances … ecosystem-differentiating protein-coding annotations in all IMG metagenomes. The work is of interest to the Department …
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Eelgrass Proves to Be Much Younger Than We Thought
… to assess absolute time estimates for major colonization events. It was previously assumed, due to the wide and … closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean occurring within the last … provided timepoints of eelgrass’s major global colonization events. The U.S. Department of Energy Joint Genome …
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Integrating Experimentation with Data
… Keynote Speakers Jim Collins Massachusetts Institute of Technology …
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Finding the Fermenters
… from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. … The phenotype and genotype of fermentative prokaryotes on IMG …
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When “The Blob” Made It Hotter Under the Water
… of how marine microbial communities are affected by warming events. More time-series studies could help researchers … temperatures rise, so do instances of extreme weather events such as hurricanes and droughts. Another one began in … and the global carbon cycle. Tracking large-scale marine events such as The Blob is difficult, but critical. By 2016, …
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JGI-KBase Panel at SACNAS
… internship, and before ever publishing a research article. Speakers will highlight opportunities for students through …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus … the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a community resource for comparative analysis … IMG/M Data portal …
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Defining a Pan-Genome for Antarctic Archaea
… through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a … content that was likely acquired due to gene transfer events. Such events can occur in response to viral infections and are … Samples on IMG/M Data portal …
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Neha Varghese
… and implementation of microservices in conjunction with the IMG platform. …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from …
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Nikos Kyrpides
… analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and …
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