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Natural Prodcast Episode 10: A Primer on Genome Mining
… in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … peptides, remember, are big, complicated enzyme systems that really just exist to pull an amino acid out of …
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Frequently Asked Questions: Project Management
… sample and project metadata, and to access JGI tools and systems. … Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …
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Natural Prodcast Episode 23: Aaron Puri
… the genes for and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …
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JGI@25
… artist Nigel Sussman and dedicated at our 2022 Annual Meeting.  …
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Natural Prodcast Episode 7: Ben Shen
… genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural … So, you may know the so-called Nagoya protocol, which prevents taking bio-resources from the native countries. So … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in …
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Supporting Global Research into Actinomycetes
… in soil and can be used as biocontrol agents and to promote plant growth. It is the largest genus within Actinobacteria … and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially … of Science User Facility, as well as a member of  its Secondary Metabolites research group . That group, led by …
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Partners
… with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE … Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National …
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User Executive Committee
… offered, proposal review procedures and the annual user meeting. The UEC also acts as a liaison to the user …
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JGI Mural
… Nigel Sussman. It was dedicated at the 2022 JGI Annual Meeting. …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the … determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … Programme: Deconstruction and Reconstruction of the Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of …
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Industry Engagement Program
… Facultative Methylotroph technology — interact with rice plants. Using the JGI’s fabricated ecosystem technology ( … will generate third-party validation of NewLeaf’s microbial plant growth promotion technologies.  …
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Microbiome Data Science Team
… A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. … uncovers gaps in amplicon-based detection of microbial diversity.  Nature Microbiol .  15032 Eloe-Fadrosh …
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