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Natural Prodcast Episode 17: Cassandra Quave
… people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be … We have sequencing facilities, DNA synthesis, metabolomics. Where do you see the role of a big place like JGI in …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be listed as co-PIs or collaborators.   JGI’s standard User Agreement must be signed before work can …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles … Metabolite Analysis & Metabolomics Instrumentation … Metabolomics Platform Lead …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, … and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge … sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …
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DAP-seq Drives Robust Mapping of Gene Regulation
… are activated to sustain life’s processes.  Traditionally, mapping this intricate network of regulatory “switches” in … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a lot of action happening in terms of where those binding sites are in the genome — those sequences are moving around, …
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Natural Prodcast Episode 20: Brian Bachmann
… you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk … And we can use our fancy multiplexed activity metabolomics method to tell us what’s active, which peak is active … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …
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Publication Policy
… of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … of the journal in which the research is published. The JGI expects that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation — and …
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Natural Prodcast Episode 3: The Primer, Part 3
… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … I mean, I know a lot of sequencing is needed to be able to map that evolutionary tree to better understand these … the organization in terms of the sequencing and the metabolomics, synthetic biology. But we need people from outside of …
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