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Natural Prodcast Episode 10: A Primer on Genome Mining
… Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Welcome back … to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … genome mining is, if I want to explain that to someone who doesn’t know much about genetics or anything else, science …
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Natural Prodcast Episode 12: Nadine Ziemert
… Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Welcome … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … outside my yard or so. Also, what we wanted to look at is, does it make a difference if I go today and tomorrow? Can I …
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New Lineages of Life Group
… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure …
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Natural Prodcast Episode 11: Marnix Medema
… Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Hey there, … up a tiny bit and just say what antiSMASH actually is and does. Marnix Medema: Yeah. So antiSMASH. We built antiSMASH … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …
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Natural Prodcast Episode 22: Alison Narayan
… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … the field of biocatalysis and what needs to be done across science to to get a point where we can predict an enzymes … perfect timing for an October podcast release. I hope that doesn’t get me canceled.The monthly schedule seems to be …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in …
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DAP-seq Drives Robust Mapping of Gene Regulation
… plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this advancement holds the potential to … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence …
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Natural Prodcast Episode 6: Marc Chevrette
… Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi … describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … all over the world in the next couple of years. DAN: What does it take to become a hub? MARC: We’re still trying to …
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Natural Prodcast Episode 16: Marcy Balunas
… I didn’t know how to get towards that.  Organic chemistry doesn’t really help with getting to something other than the … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t … we talked and I’ve noticed that you stay focused on the science and I think that’s great. But I spend a lot of time …
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Natural Prodcast Episode 3: The Primer, Part 3
… Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey … state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … we recognize and sticking another piece in, that usually doesn’t work, or if it does work, it doesn’t work as well, …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to … increasingly collaborative and multidisciplinary nature of DOE mission science projects, this initiative aims to … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …
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Partners
… The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve as impact multipliers . The JGI has a … support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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