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… CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed …

… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to create a … limited to: Public data: datasets associated with completed projects that are eligible for public release, have …

… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … Grigoriev said. All of these genomes are available at  MycoCosm . If initially, the task of mapping fungal RNA to …

…   Revisit past projects …

… UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. … worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to …

… users with various outputs free of charge, including data such as fully annotated genome assemblies or differential gene expression results. For DNA synthesis projects, JGI ships physical materials like expression … charge for non-proprietary research; the vast majority of projects fall into this category. Users are responsible for …

… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value … implementation of machine learning approaches and AI based tools to carry out explorative analysis. … rapid processing and analysis of large amounts of genomic data. In particular we focus on the integration and …