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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s … the DNA that was breaking the sequencing from really being functional was these secondary metabolite pathways. So why … secondary metabolites? Give me a sense of this kind of functionality. MARC: Some are more gifted than others. So a …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in finding …
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Metagenome Program
… a snapshot of microbial diversity and their metabolic functional potential. This research enables us to better … pathways, enabling modeling of microbiomes based on functional traits. These advancements provide new insights … serves as a community resource for comparative analysis and annotation of all publicly available genomes from three …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… 10 to the negative 9th. Picomolar, 10 to the negative 12th. DAN: Yeah. So very-- BETSY PARKINSON: Very, very-- … And so we're working with the JGI to actually explore 92 of these receptors both from clusters with known and … But what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this …
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How to Submit Sequencing Samples
Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality … must also include a completed Export Certification Form . 2) Obtain Approval for Shipping Before approval to ship is … accept any materials classified above NIH Biosafety Level 2. 3) Review Shipping Instructions After receiving shipping …
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Natural Prodcast Episode 15: Katherine Duncan
… inside them. And this was, I think it must’ve been about 2001, maybe, and so it was before smartphones and before … I’m going to learn microbiology. So I went to– this was in 2008 by then. And I’ve never done– I mean, I think I did … for Marine Science. And then I started my own group in 2016. And it very much ties in all of those experiences, you …
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Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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Erratum: Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying unknown compounds (Pactolus). … …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate … information into biological function. Through our CSP Functional Genomics call , we look for projects that will … Below find a list of the nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline …
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Natural Prodcast Episode 14: Nigel Mouncey
… screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … development lab and research lab all the way from Ambr250 fermenters to 2 liter Dasket fermenters to 30 liter … it’s really about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based …
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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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