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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … And for the audience, ethnobotany is the scientific study of the ways that people interact with plants, whether it’s for plants to make clothing, or musical instruments, or food, or medicine, which was really where my …
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Data Ecosystem
… specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek … scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …
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Natural Prodcast Episode 6: Marc Chevrette
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to Episode 6 … terrible. I was able to clean it up quite a bit, and the conversation was so interesting that I wanted to include it. … back together. So a lot of sequencing depends on Illumina technology, which is usually what we refer to as “short …
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural Products meeting earlier this … of them to be highly related to enzymes that we have been studying since day one in my lab that do oxidative …
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Metabolomics Program
… metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and … communities, and samples including state-of-the-art instrumentation and informatic approaches.By bridging genomics … health, and bioenergy development. … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Natural Prodcast Episode 1: The Primer, Part 1
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … and the environment – problems that might need special technology for DNA sequencing, genomics, metabolomics, and … I’m definitely seeing why this is such an important area to study. Okay, what’s your third story?  DAN: The third story …
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps translate their …
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …
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