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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial …
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DNA Synthesis Program
Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox … to produce desired chemicals. … The JGI's DNA Synthesis Science Group supports researchers exploring how to convert …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample … Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … do an environmental microbial community (metagenomic) soil study in an untouched region of the Everglades, the …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … secrete a lot more things than people do…? Although I don’t study people so maybe I’m wrong. But yeah, I mean, because I … them as very small fungi. And this came from a growth on a cow’s cheek. Historically, before antibiotics were common, …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on our archive site.  …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
Register here Book your stay at the conference venue This inaugural event will bring together researchers across … laboratory ecosystems to help transition microbiome science from largely observational to reproducible …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all work performed …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi … was so interesting that I wanted to include it. This is a conversation with Marc Chevrette. Marc is a …
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Scientific Advisory Committee
… and strategic objectives of the JGI. The SAC serves as the Institute's key external advisory panel and advocate of the … and scientific relevance and quality. Responsibilities of this board include providing technical input on large-scale … of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects and, with …
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Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … sphagnum work to transfer their thermotolerance abilities. This capacity to survive elevated temperatures that normally … slides and anticipating the inevitable questions about the study’s methods and analysis, Lawrence is spending time on …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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