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… products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

… single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of … strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified …

… with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi deliver water and nutrients. In … interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom …

… such as fully annotated genome assemblies or differential gene expression results. For DNA synthesis projects, JGI … These are both protocols that we do not have yet in production, so we're not … with single organisms and mixed cultures of fungi, algae, protists, bacteria, archaea, viruses, plants, including …

… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. … so destructive in houses. A study involving six brown rot fungi reveals the genomic changes Serpula lacrymans has … adapting to thrive in built environments. Summary Unlike white rots, brown rots break down only the cellulose and …

… 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … Plants . C-fern has a genome approximately three times the size of the human genome. There are four more fern genomes … a true view of evolutionary-derived genomes,” Schmutz explained. “…They provide a more straightforward way to …

… of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … located at Lawrence Berkeley National Laboratory. “These proteins’ binding preferences are very, very stable over long … with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s availability to users is a …

… instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the October … Grigoriev’s recent work includes the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant … which identified new genomes highlighting the diversity of white rot fungi in the genus Lentinula. Dan Rokhsar looked …

… Fungi from herbivore poop make surprisingly complex … recently, O’Malley’s team has begun to understand the outsized role the fungi play in digesting plant material in … that these expressed genes translated into expected proteins. That work was done in collaboration with the …

… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative … Olpidium is a link in the evolution and transition of fungi from aquatic to terrestrial habitats. The work is part … with the two publications of the kingdom-wide, multi-gene phylogeny of fungi by James et al. and Sekimoto et al . …