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The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … National Microbiome Data Collective.        … Learn more about our work at the JGI:  …

The Prokaryote Advisory Committee is chartered to offer advice, guidance and counsel on the … objectives of the microbial and metagenome programs and report back to them. The Committee is chartered to render advice, guidance, and counsel on the …

So we’ve got Kate here today, and we wanted to talk to her about a whole list of things. So we have a Scripps … and we want to talk about molecular networking, because I really enjoyed the review that you wrote with Marnix … able to, say, see biosynthetic pathways? Or can we see a progression in metabolites and metabolite families? Or are …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I …

… we recorded in my hotel room at SIMB, or the Society for Industrial Microbiology conference that took place in January … this happen. We had a really fun conversation with Roger about all this, in terms of how to build an international … define standards for the minimum information that should be reported. And to develop a schema by which you can report …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across … expressability: We are developing a Heterologous Expression Report Card toolkit (HERC-tk) to enable users to identify … and ever-improving, and to facilitate discussion and debate about the data. It is also a place where the community can …

Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the science and scientists of … and I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … not in this field either. So they used antiSMASH and they report findings using antiSMASH. And it’s actually quite a …

Department of Energy Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the … CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven student-drafted articles … available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ …

… science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope of … analysts and other technical experts Track, monitor and report analysis status to investigators Facilitate data … with DOE JGI Science Program leads Solicit user feedback about your overall experience working with the JGI. Find out …

… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … lot of crossover, where us genome miners get really jazzed about finding enzymes that do unusual or unprecedented … Tropolone Synthesis”, (preprint)  ChemRxiv.  2023.   doi: 10.26434/chemrxiv-2023-lvngd “Enabling Broader …

The JGI aims to inspire more students to enter the STEM … and environmental genomics research frontier.  Learn more about the JGI's activities in this space.         Special … A&M University … CalTeach … Biotech Partners … Learn more about internship programs we work with:  …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  … state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has …