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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This type of enrichment could be applied in a number of ways including gathering a more complete view of a …
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Building Wet and Dry Lab Skills
… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … the supervision of their mentors, they were responsible for all steps of the experiment from growing and inoculating … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … joined the SPRUCE team, which aims to predict what might happen to the carbon trapped in the peatlands as the world … and graphics land well with those in the audience, he’s always working to fine tune his approach. “I got a lot of that …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described … to single hosts, and instead of lysing them, which appears to be prevalent in marine environments, they were … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in … also help  prevent flowering, which would enhance the biosafety of genetically engineered trees. Summary The shrub … and songbird species, the system in shrub willow is flipped: females are heterogametic. To avoid confusion with the …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a … don’t engage in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … in microbes, these biosensors may eventually lead to ways to improve cellulose-based biofuel synthesis. …
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Defining a Pan-Genome for Antarctic Archaea
… cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … sized pieces.  Interestingly, much of the strain variation appeared related to defense against viruses. Experiments …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited Researchers list assembly …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through … technology, engineering, and mathematics (STEM) workforce. In doing so, it is our ambition to further develop a …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine microbial … it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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