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Steven Wilson
… Wilson brings a user-centered approach, an ability to work with others to break down complex issues into achievable … in coordinating teams and project management, he worked with the Informatics Department to develop software that …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved understanding of multiple forest systems, … more information about fungi in these environments. “Now with these new tools — metatranscriptomics, RNA sequencing …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine … by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows … and research teams. Even better, creating comparable data with useful and accessible metadata multiplies these …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of … technology, which combines an in vitro transcription assay with RNA sequencing, they were able to identify the target … factors to initiate transcription of gene sets associated with functions like stress responses and cellular …
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JGI User Executive Committee Expands
… and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study span the … development. Maurice is a fungal evolutionary ecologist with interests in understanding which processes change … is a staff scientist at Los Alamos National Laboratory. With a background in fungal genetics and evolution, he …
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Green Algae Reveal One mRNA Encodes Many Proteins
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… our  2022 Annual Meeting . The meeting was a hybrid event, with guests joining onsite at the Integrative Genomics … delved into algae blooms and the alga-viral interactions within them; and Susan Wessler of UC Riverside, who … and recaps of all three keynote talks follow, starting with Jennifer Doudna.  Jennifer Doudna , UC Berkeley “We …
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Supporting Global Research into Actinomycetes
… is more than just a funny word. The 500 species described within the group are responsible for roughly two-thirds of … agents and to promote plant growth. It is the largest genus within Actinobacteria and therefore a cornerstone of … is tailored to help users overcome challenges working with actinobacteria and serves as a freely accessible …
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Katherine Louie
… over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced … DNA-SIP for helping identify active micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… in 1990 when the U.S. Department of Energy (DOE) partnered with the National Institutes of Health. The DOE works with the National Nuclear Security Administration to … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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JGI@25: Studying Sorghum’s Survival Skills
… biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … Genome roster. Sorghum has an important feature in common with certain other cereal crops: It performs C4 … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … down hemicellulose. The authors think this might have to do with the differences in lifestyle: honey bees need ample … and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome …
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