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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … logistical and analytical. How can the research community systematically sample an ancient, hyperdiverse kingdom while …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants … to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … experiment outlines a roadmap that is transferable to other systems, expanding the technologies available for other JGI …
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Introducing New Members of the JGI User Executive Committee
… JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay … their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI … Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to …
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Tanja Woyke Elected to American Academy of Microbiology
… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … Genomics Department Head for the Environmental Genomics and Systems Biology Division of the Lab’s Biosciences Area since …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that sample, the Salk Institute team was able to … capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could eventually lead to applications …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … of achieving a predictive understanding of biological systems. “If we could model the genome as if it were a …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … Associate Director of Science; Todd Anderson, Biological Systems Science Division Director; and Ramana Madupu, BER …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth … that we use as indices. So it’s really quite a broad ecosystem approach. And that led me to get even more interested … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … community to study complex biological and environmental systems. The foundational studies enabled contribute to the …
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