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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH … is to develop tools, curated databases, and streamlined workflows that allow researchers to easily analyze viral … computational methods and analyses developed for JGI-enabled research involving environmental samples to help …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most … Improving sugarcane breeding methods using molecular biology techniques has been hampered by the crop’s highly … This work was supported by the International Consortium for Sugarcane …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust … food webs on Earth. And at their base are microscopic, photosynthetic algae. But human-induced climate change , a new … organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley … the Energy Sciences Network (ESnet) have been recognized for outstanding achievements in science, technology, and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of … The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … key to discovering new antiviral medicines and treatments for infectious disease. Streptomycetes are also abundant in …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond …
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