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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of Medicine … the Metagenome Science Program on their research are encouraged to schedule time with Emiley Eloe-Fadrosh . Click to …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial …
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DAP-seq Drives Robust Mapping of Gene Regulation
… scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as  Arabidopsis and sorghum. Together, these datasets allow scientists to explore how gene regulation varies across cell …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last …
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Effects of Polar Light Cycle on Microbial Food Web
… lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … dominates these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Virus Discoveries that Keep Getting Bigger
… quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments all over the world, scientists have discovered giants among viruses. Now … makeup of new giant viruses. This review highlights four of these approaches. One way of detecting giant viruses …
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An Addiction Crucial to a Fungus’ Reproduction
… regulate key components of its reproductive machinery The Science To better understand how beneficial organisms … effort led by researchers at Cornell University and scientists at the Joint Genome Institute, a DOE Office of … As these oil-producing fungi are potential sustainable sources of alternative fuels, so understanding …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … these datasets, researchers made a pan-genome containing four  B. hybridum  genomes and many  B. distachyon genomes. …
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The fungus that made itself at home
… Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar … environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and including researchers at the Joint Genome …
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Genomics-enabled analysis of specialized metabolism in bioenergy crops: current progress and challenges
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