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Three Join the JGI User Executive Committee
… (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National … Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of … has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and brings …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Four Researchers Join JGI User Executive Committee
… of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, … worked closely with both the Fungal & Algal Program and the Microbial Program over the past decade in gene regulatory … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, …
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal interactions, and predictive biology, modeling and biodesign — … LOIs/proposals are approved will receive further instructions via email.   Human or animal disease-related work will …
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Supporting Global Research into Actinomycetes
… word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially Streptomyces … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI Early Career Researchers Featured in mSystems Special Issue
… issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …
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Biodesign
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes … of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of … terpenes play key roles in plant growth, defense, and environmental interactions. Terpenes are also economically important because of … by FAPDF grant “Nextree” 193.000.570/2009. For the portion of the work conducted by the Joint Genome Institute and …
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Natural Prodcast Episode 5: Brad Moore
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps Institution of Oceanography. (Courtesy of B. Moore) DAN: This is the … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of …
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