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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric …
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Jasmyn Pangilinan
… reliability, thereby accelerating critical insights for the JGI User community. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( Learn more about OGG in  this episode of to the JGI podcast Genome Insider . ) Summary A recent paper … of seed plants and ferns. The genome is available on the JGI’s plant portal, Phytozome . Researchers hope to have …
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Fungal Friends or Foes in Plant Roots
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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Extracting the Secrets of Secondary Metabolites
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … CRISPR to knock out or activate genes, researchers at the JGI were able to monitor loss- and gain-of-function. The … uncharacterized biosynthetic gene cluster. That work by JGI researchers was published April 2022 in Cell Chemical …
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A Complex Confection Decoded: Sugarcane Reference Genome
… The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … High quality primary assembly not only includes a full representation of the diversity present in R570 but shows the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of … how soil ecosystems function. He was one of the eight JGI researchers on the 2023 Highly Cited Researchers list, …
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A Social Science Experience
… 2017 Summer Interns Share Highlights of their time at the JGI …
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First Monoploid Reference Sequence of Sugarcane
… polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI was part of an international team led by researchers … on having a sequence for sugarcane’s relative sorghum, a JGI Plant Flagship Genome sequence, and knowing that there …
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JGI-USCCN Strain Sequencing Opportunity
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