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… series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the … terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing (NERSC) has another … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… Genome annotations of two C. citriodora subspecies broaden understanding of … Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and evolution of the … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to …

… CheckV can help researchers assess virus sequence fragments and data … Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …

… Kaushal Sharma, one of five Antioch High School rising juniors who … Partners program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data … the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s …

… Protein annotations provide insights into environmental tendencies The … platform — has been developed to help inform scientists and researchers more about the patterns and functions of … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … known methanogens. With the help of this information, the researchers found evolutionary relationships between …

… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , … early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …

… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …

… Congratulations to the JGI’s Tanja Woyke , who has been … of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … was among the Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell …

… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are … can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is … specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …