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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … and humans, but also microbes whose presence or absence can impact the planet’s nutrient cycles. While most organism’s … all across the world and lead to cell death and/or profound changes in the cell physiology during infection.” While all …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … These kinds of innovations are particularly relevant as climate change intensifies and accelerates drought and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Filling in the Plant Tree of Life
… plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive … crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Three Join the JGI User Executive Committee
… (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and … geochemical data, which in turn can help to understand its impact on climate along earth history.” Marker genes for …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … the level of gene expression by the gradations. The Impact Metabolic engineering could lead to sustainable …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites are useful in a variety of …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … If you find that our trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … what extent is natural soil a limit to identify molecules exchanged between plants and microbiomes during interactions? …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … between cultivated and wild shiitake populations. The Impact Lentinula mushrooms are white rot fungi, belonging to …
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