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JGI Accepts 17 Proposals for Community Science Program
… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual … aim to unlock the genomic diversity within the eucalypts, a group of fast-growing tree species that are widely grown as …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … proper face covering, was JGI’s Administrative Services Group lead Denise Yadon, delivering the (baked) goods – a … a red carnation lei flown in from Maui, care of the Admin Group’s Terri Bartolome. What proceeded from there was a …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems …
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … all entities in the system. The JGI’s  Genomic Standards Group, which manages GOLD, communicates personally with …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the … for collecting genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … of extraordinary complexity. Beyond the sheer number of undiscovered species lies an even thornier problem: The … Moving toward 10,000 fungal genomes and beyond will yield novel enzymes and metabolites, enable prediction of fungal …
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Streamlining Regulon Identification in Bacteria
… factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated … This work was supported by the U.S. Department of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … hone science presentation skills, and participate in professional development enrichment activities. For some … Merced internship program was founded in 2014 with the goal of inspiring students to embark on a career in genomics and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … analyze but also create DNA sequences mimicking an array of microbial life. By leveraging massive user-generated … meaning and relevance of new sequences. It can generate novel sequences based on the principles it learns from the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … meliloti .  S. meliloti is one of the rhizobia, a group of nitrogen-fixing bacteria with symbiotic … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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