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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from … ranging from nutrient cycling to plant health and growth. Developing a scalable computational approach that provides … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the …
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Introducing New Members of the JGI User Executive Committee
… new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI … collaborators and other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   … conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic … The authors acknowledge their funding sources: Office of Biological and …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information … complete this task. Improving the download process for this group of users offered the promise of an immediate benefit. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of … metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … of freedom to explore,” he recalled. His project involved developing an algorithm and although the scope of work was …
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A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation
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Microbiome composition modulates secondary metabolism in a multispecies bacterial community
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Viral potential to modulate microbial methane metabolism varies by habitat
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … is on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics … have a great impact on these algal blooms. So Vardi and his group study one specific alga,  Emiliania huxleyi  … in computational analysis to identify and characterize TEs, developing software to annotate them in plants other than …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The … JGI Community Science Program (CSP), a critical factor in developing sugarcane as a sustainable bioenergy feedstocks. … sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than 80 percent found to be …
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