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… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back … see as the overall “theme” of your research? I know you’ve generally worked in various marine organisms. Except during …

… their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of …

… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black …

… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play …

Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … with the two publications of the kingdom-wide, multi-gene phylogeny of fungi by James et al. and Sekimoto et al . … non-flagellated terrestrial fungi suggested that there were multiple flagellum loss events during the diversification of …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism …

Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …

…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users … synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …

… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play … Intent are due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research …

… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of … to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …

A special issue of Synthetic Biology celebrates research enabled by the JGI … Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … and synthesis work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …