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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. … Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around the world. That …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Tracking the Origins of Methane-Producing Microbes
… cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg … separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them archaea. The …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Partners program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal …
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Kjiersten Fagnan
Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … postdoctoral fellowship at NERSC and LBNL’s Computational Research Division.. As a postdoc, her research focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable …
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Brachypodium: 20 years as a grass biology model system; the way forward?
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How Filamentous Fungi Sense Food
Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided … organizations. … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a …
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2022 Progress Report
… seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … leading integrative genome science user facility enabling researchers to solve the world’s evolving energy and …   Mission  The mission of the JGI is to provide the global research community with access to the most advanced …
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Tanja Woyke Elected to American Academy of Microbiology
… of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of scientific … was among the Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One …
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Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  …
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