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… bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced analysis pipelines and tools as well as …

Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, … to identify variations of essential genes in metabolic networks that were missed using traditional approaches. This …

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… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel …

… with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral … for the overall design and implementation of computational biology and bioinformatics approaches in support of meeting … Epidemic: Determining the Epistatic and Pleiotropic Genetic Architectures for Chronic Pain and Opioid Addiction,” …

To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley … let researchers around the world compare their work consistently. And EcoFABs also work well in the classroom. … visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …

After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls University Tübingen (Germany), … Nature Communications, Nature Protocols, Nature Reviews Genetics, ISME J, Nucleic Acids Research, DOE Small Business …

We count on livestock for food and fiber, but raising these animals … produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea … Eventually, that could help us dial back their emissions, while still producing things like meat, milk, and wool. …

Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … of a novel archaeum from a hot spring that has the genetic machinery to perform hydrogenotrophic methanogenesis …

… and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns … cohort describe their deep dives into genomics, computational tools, and big data.  …

Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes this annual gathering of leaders from diverse … are addressing the world’s most pressing energy and environmental challenges.  The invited talks emphasize how the …

… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … to large and even giant. The genomes of giant viruses are on the order of 100 times the size of what has typically … 10-fold from just 205 genomes, redefining the phylogenetic tree of giant viruses. Metabolic Reprogramming a …