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JGIota: Looking Back at Methane-Making Microbes
… Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their … global RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Bacterial Microcompartments
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … of such a highly motivating and collaborative research environment such as JGI/LBNL. What is/has been one of your … in my project was worth it whenever I was able to get a single line of code working and get the desired final …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these … more with JGI Microbial Program head Tanja Woyke and her Single Cells team member Frederik Schulz to screen the …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … research community in studies of complex biological and environmental systems. We optimize our service to the community … A record number of primary users — 2,475 — had active proposals with us, …
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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Reference genome sequence of the model plant Setaria
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Genome sequence of the model rice variety KitaakeX
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