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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… can deliver multiple types of payloads, such as individual genes, whole pathways, genome-editing tools, and reporters.” … enzyme Cas9. Originally, CRAGE was only used to  insert genes of interest. But now, with Cas9, CRAGE can be used for … means that scientists can modify gene expression, or delete genes, all with the rapid engineering capability of CRAGE. …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… peering into the function and activity of phytoplankton genes and looking at how communities of these microalgae … alga Microglena sp. YARC, which also contains expanded genes for proteins requiring zinc. Co-expression analysis as …
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Uncovering Novel Genomes from Earth’s Microbiomes
… of the microbial communities in the environmental samples without needing to isolate individual organisms, using … (MAGs) directly from sequenced environmental samples without needing to cultivate the microbes in the lab,” noted …
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Fungal Friends or Foes in Plant Roots
… genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host interactions and … fungi that live within plants (endophytes). These include genes that degrade plant cell walls and break down plant …
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Better Crops With a Pointillist Approach to Plant Genomics
… using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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A Natural Mechanism Can Turbocharge Viral Evolution
… pathogens and pull them out, like fish on a fishing line, without harming the rest of the microbial community. The …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… work on transposable elements and how understanding these genes has helped pave the way for the conception of a … transposable elements (TEs) — also known as “jumping genes” because these genes can change position within a genome — in plants to see …
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Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
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Introducing New Members of the JGI User Executive Committee
… in which they inadvertently analyzed use-restricted data without contacting the lab that generated that data,” he …
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Cracking the Secrets of the Diatom’s Shell
… beautiful properties of their silica shells. But what genes are responsible for such mesmerizing exteriors? …
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Nikos Kyrpides
… of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Selected Publications …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … was particularly important for characterizing fungal genes, because, unlike bacteria, they often carry … team to have a much more comprehensive picture of microbial genes in the soil and to which type of microbe they …
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