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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … in biomass each year to do so. As such, they are considered to have a substantial influence on the global carbon …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … single-transcriptomics to plant tissues, also co-authored by Cole, started with Lab-funded research by … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … microbial community from geothermal hot springs, they uncovered a novel cellulose-degrading bacterium typically found in …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The … from The Ohio State University and the University of Michigan studying how virus infections cause significant … global microbial diversity with an aim to improve predictive ecosystems models, University of Michigan’s …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … collection to identify microbial markers that would allow farmers to screen livestock, and breed low-methane producing …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … The authors acknowledge their funding sources: Office of Biological and Environmental Research of the U.S. …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … platform (http://southgreen.cirad.fr). For the portion of the work conducted by the Joint Genome Institute and the …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … more near-complete genomes from soil metagenomes compared to other methods. The Impact Understanding how … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … This work was supported by the Energy Biosciences Institute and the DOE … Innovation, which is supported by the U.S. Department of Energy, Office of Science, Office of Biological and …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program … of current interns, mentors, alumni, and other staff gathered at the Integrative Genomics Building, the JGI’s home at …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that …
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