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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit … white papers to the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … system v.7.0: content updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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scMicrobe PTA: near complete genomes from single bacterial cells
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact … the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the …
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iPHoP: A Matchmaker for Phages and their Hosts
For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic …
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Emiley Eloe-Fadrosh
… pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … through multiDAP, which allows researchers to conduct comparative analyses across the genomes of multiple species … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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